% References for longhorizon.blue: the papers and monitoring programs the pages cite.
% Papers: BibTeX from doi.org, re-keyed. keywords = the section of /references/ (sound, hypoxia, fields, programs);
% annote = what the entry supports on the site. scripts/build-references.py renders /references/ from this file.

@incollection{odonnell2013physical,
  author = {O’Donnell, James and Wilson, Robert E. and Lwiza, Kamazima and Whitney, Michael and Bohlen, W. Frank and Codiga, Daniel and Fribance, Diane B. and Fake, Todd and Bowman, Malcolm and Varekamp, Johan},
  title = {The Physical Oceanography of Long Island Sound},
  booktitle = {Long Island Sound: Prospects for the Urban Sea},
  editor = {Latimer, James S. and Tedesco, Mark A. and Swanson, R. Lawrence and Yarish, Charles and Stacey, Paul E. and Garza, Corey},
  series = {Springer Series on Environmental Management},
  publisher = {Springer New York},
  year = {2013},
  pages = {79–158},
  doi = {10.1007/978-1-4614-6126-5_3},
  keywords = {sound},
  sortkey = {1},
  annote = {Circulation, stratification and mixing of the Sound: the standard overview.},
}

@incollection{lewis2013geology,
  author = {Lewis, Ralph},
  title = {The Geology of Long Island Sound},
  booktitle = {Long Island Sound: Prospects for the Urban Sea},
  editor = {Latimer, James S. and Tedesco, Mark A. and Swanson, R. Lawrence and Yarish, Charles and Stacey, Paul E. and Garza, Corey},
  series = {Springer Series on Environmental Management},
  publisher = {Springer New York},
  year = {2013},
  pages = {47–77},
  doi = {10.1007/978-1-4614-6126-5_2},
  keywords = {sound},
  annote = {Glacial origin of the Sound and the bluffs of Long Island's north shore.},
}

@book{latimer2014urban,
  editor = {Latimer, James S. and Tedesco, Mark A. and Swanson, R. Lawrence and Yarish, Charles and Stacey, Paul E. and Garza, Corey},
  title = {Long Island Sound: Prospects for the Urban Sea},
  series = {Springer Series on Environmental Management},
  publisher = {Springer New York},
  year = {2014},
  doi = {10.1007/978-1-4614-6126-5},
  keywords = {sound},
  annote = {The volume containing both chapters above.},
}

@article{shin2021waves,
  author = {Shin, Y. and Cifuentes‐Lorenzen, A. and Howard Strobel, M. M. and O’Donnell, J.},
  title = {Waves in Western Long Island Sound: A Fetch‐Limited Coastal Basin},
  journal = {Journal of Geophysical Research: Oceans},
  publisher = {American Geophysical Union (AGU)},
  year = {2021},
  volume = {126},
  number = {2},
  pages = {e2020JC016468},
  doi = {10.1029/2020JC016468},
  keywords = {sound},
  sortkey = {2},
  annote = {Waves in the western Sound are fetch-limited, larger under easterly winds than westerlies.},
}

@article{wilson2008hypoxia,
  author = {Wilson, Robert E. and Swanson, R. Lawrence and Crowley, Heather A.},
  title = {Perspectives on long‐term variations in hypoxic conditions in western Long Island Sound},
  journal = {Journal of Geophysical Research: Oceans},
  publisher = {American Geophysical Union (AGU)},
  year = {2008},
  volume = {113},
  number = {C12},
  doi = {10.1029/2007JC004693},
  keywords = {hypoxia},
  annote = {Long-term variation of hypoxia in the western Sound.},
}

@article{anderson2001pulses,
  author = {Anderson, Timothy H. and Taylor, Gordon T.},
  title = {Nutrient Pulses, Plankton Blooms, and Seasonal Hypoxia in Western Long Island Sound},
  journal = {Estuaries},
  publisher = {Springer Science and Business Media LLC},
  year = {2001},
  volume = {24},
  number = {2},
  pages = {228},
  doi = {10.2307/1352947},
  keywords = {hypoxia},
  annote = {Nutrient pulses, plankton blooms and seasonal hypoxia in the western Sound.},
}

@article{torgersen1997mixing,
  author = {Torgersen, Thomas and DeAngelo, Edward and O’Donnell, James},
  title = {Calculations of Horizontal Mixing Rates Using 222 Rn and the Controls on Hypoxia in Western Long Island Sound, 1991},
  journal = {Estuaries},
  publisher = {Springer Science and Business Media LLC},
  year = {1997},
  volume = {20},
  number = {2},
  pages = {328},
  doi = {10.2307/1352348},
  keywords = {hypoxia},
  annote = {Horizontal mixing and the physical controls on western-Sound hypoxia.},
}

@article{chin2017mur,
  author = {Chin, Toshio Michael and Vazquez-Cuervo, Jorge and Armstrong, Edward M.},
  title = {A multi-scale high-resolution analysis of global sea surface temperature},
  journal = {Remote Sensing of Environment},
  publisher = {Elsevier BV},
  year = {2017},
  volume = {200},
  pages = {154–169},
  doi = {10.1016/j.rse.2017.07.029},
  keywords = {fields},
  annote = {The MUR sea surface temperature analysis (the SST layer).},
}

@misc{jpl2015mur,
  author = {{NASA/JPL}},
  title = {GHRSST Level 4 MUR Global Foundation Sea Surface Temperature Analysis (v4.1)},
  publisher = {NASA Physical Oceanography Distributed Active Archive Center},
  year = {2015},
  doi = {10.5067/GHGMR-4FJ04},
  keywords = {fields},
  annote = {The MUR SST dataset (v4.1), served through NOAA CoastWatch.},
}

@article{wang2009kd490,
  author = {Wang, Menghua and Son, SeungHyun and Harding, Lawrence W.},
  title = {Retrieval of diffuse attenuation coefficient in the Chesapeake Bay and turbid ocean regions for satellite ocean color applications},
  journal = {Journal of Geophysical Research: Oceans},
  publisher = {American Geophysical Union (AGU)},
  year = {2009},
  volume = {114},
  number = {C10},
  doi = {10.1029/2009JC005286},
  keywords = {fields},
  annote = {Background: retrieving the diffuse attenuation coefficient Kd(490) in turbid coastal and estuarine water.},
}

@article{hu2012chlorophyll,
  author = {Hu, Chuanmin and Lee, Zhongping and Franz, Bryan},
  title = {Chlorophyll a algorithms for oligotrophic oceans: A novel approach based on three‐band reflectance difference},
  journal = {Journal of Geophysical Research: Oceans},
  publisher = {American Geophysical Union (AGU)},
  year = {2012},
  volume = {117},
  number = {C1},
  doi = {10.1029/2011JC007395},
  keywords = {fields},
  annote = {Background: chlorophyll-a retrieval from satellite ocean colour (a band-difference algorithm).},
}

@article{chen2003fvcom,
  author = {Chen, Changsheng and Liu, Hedong and Beardsley, Robert C.},
  title = {An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries},
  journal = {Journal of Atmospheric and Oceanic Technology},
  publisher = {American Meteorological Society},
  year = {2003},
  volume = {20},
  number = {1},
  pages = {159–186},
  doi = {10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2},
  keywords = {fields},
  annote = {FVCOM, the unstructured-grid model behind the currents layer.},
}

@article{chen2006fvcom,
  author = {Chen, Changsheng and Beardsley, Roberet and Cowles, Geoffrey},
  title = {An Unstructured Grid, Finite-Volume Coastal Ocean Model (FVCOM) System},
  journal = {Oceanography},
  publisher = {The Oceanography Society},
  year = {2006},
  volume = {19},
  number = {1},
  pages = {78–89},
  doi = {10.5670/oceanog.2006.92},
  keywords = {fields},
  annote = {The FVCOM system and its coastal forecast applications, including NECOFS.},
}

@misc{lisicos,
  author = {{LISICOS, Department of Marine Sciences, University of Connecticut}},
  title = {Long Island Sound Integrated Coastal Observing System},
  url = {https://lisicos.uconn.edu/},
  urldate = {2026-10-11},
  keywords = {observing},
  annote = {The buoys behind this page: temperature, salinity, oxygen, turbidity and weather.},
}

@misc{lisp2024hypoxia,
  author = {{Long Island Sound Partnership}},
  title = {Hypoxia: area and duration in Long Island Sound},
  url = {https://lispartnership.org/our-vision-and-plan/clean-waters-and-healthy-watersheds/reduce-nutrients/hypoxia-toolkit/},
  urldate = {2026-10-11},
  keywords = {programs},
  annote = {The EPA National Estuary Program for the Sound: the official hypoxia indicator, nitrogen targets, and how hypoxia forms.},
}

@misc{ctdeep_lis,
  author = {{Connecticut Department of Energy and Environmental Protection}},
  title = {Long Island Sound Water Quality and Hypoxia Monitoring Program},
  url = {https://portal.ct.gov/DEEP-LISWaterQuality},
  urldate = {2026-10-11},
  keywords = {programs},
  annote = {Sound-wide ship surveys since 1991: up to 48 stations every two weeks in summer, with nutrients and plankton.},
}

@misc{iec_wlis,
  author = {{Interstate Environmental Commission}},
  title = {Western Long Island Sound hypoxia surveys},
  url = {https://www.iec-nynjct.org/},
  urldate = {2026-10-11},
  keywords = {programs},
  annote = {Weekly summer surveys at 22 western-Sound stations: oxygen, turbidity, Secchi depth, and nutrients and chlorophyll at about half of them.},
}

@misc{sts_monitoring,
  author = {{Save the Sound}},
  title = {How's the water: water quality monitoring programs},
  url = {https://www.savethesound.org/2024/08/19/hows-the-water-understanding-our-different-water-quality-monitoring-programs/},
  urldate = {2026-10-11},
  keywords = {programs},
  annote = {Weekly bacteria (Enterococcus) monitoring at about 65 western-Sound sites, and the Unified Water Study of oxygen, chlorophyll and turbidity in the Sound's bays and harbors.},
}

@misc{nycdep_harbor,
  author = {{New York City Department of Environmental Protection}},
  title = {New York Harbor Water Quality Report (Harbor Survey)},
  url = {https://www.nyc.gov/assets/dep/downloads/pdf/water/nyc-waterways/harbor-water-quality-report/2017-new-york-harbor-water-quality-report.pdf},
  urldate = {2026-10-11},
  keywords = {programs},
  annote = {Since 1909: fecal coliform bacteria, oxygen, chlorophyll and clarity in the harbor, including the East River and the western Sound's city waters.},
}

@misc{epa_roe_hypoxia,
  author = {{U.S. Environmental Protection Agency}},
  title = {Report on the Environment: Hypoxia in the Gulf of America and Long Island Sound},
  year = {2023},
  note = {Last updated October 4, 2023},
  url = {https://cfpub.epa.gov/roe/indicator.cfm?i=41},
  urldate = {2026-10-11},
  keywords = {hypoxia},
  annote = {The national indicator for Long Island Sound hypoxia, with its history since 1987.},
}

@misc{usgs2010geology,
  author = {{U.S. Geological Survey}},
  title = {Open-File Report 2010-1007: geologic setting of Long Island Sound},
  url = {https://pubs.usgs.gov/of/2010/1007/html/setting.html},
  urldate = {2026-10-11},
  keywords = {sound},
  annote = {The glacial moraine and the eroding bluffs of Long Island's north shore.},
}